PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022859m
Common NameCICLE_v10022564mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 127aa    MW: 14563.3 Da    PI: 9.5352
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022859mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.92.8e-25128853128
              NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ewyfFs+ +kkya+++r  r+tk g Wk tg d+++ ++ ++e++g+kk Lvf+kg+ +k++kt+Wv+hey+ 
  Ciclev10022859m  12 PDDEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDNcGKEVIGVKKNLVFHKGHGSKAKKTSWVIHEYHS 88 
                      4688**************************************988889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.7771107IPR003441NAC domain
PfamPF023652.3E-12687IPR003441NAC domain
SuperFamilySSF1019414.05E-2712105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MFIFYVEQAA TPDDEEWYFF SELQKKYANS DRVDRTTKVG SWKVTGGDRQ IWDNCGKEVI  60
GVKKNLVFHK GHGSKAKKTS WVIHEYHSSK ASIHQKPYYV LCRLRGKLDD KPENYSRGES  120
SGHAGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-151410473165NAC domain-containing protein 19
3swm_B3e-151410473165NAC domain-containing protein 19
3swm_C3e-151410473165NAC domain-containing protein 19
3swm_D3e-151410473165NAC domain-containing protein 19
3swp_A3e-151410473165NAC domain-containing protein 19
3swp_B3e-151410473165NAC domain-containing protein 19
3swp_C3e-151410473165NAC domain-containing protein 19
3swp_D3e-151410473165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491409.15e-85NAC domain-containing protein 96-like
TrEMBLV4VX391e-89V4VX39_9ROSI; Uncharacterized protein
STRINGXP_006491409.12e-84(Citrus sinensis)
STRINGXP_006444688.12e-84(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-25NAC domain containing protein 2