PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10023255m

Common Name

CICLE_v10023255mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 257aa MW: 28818.2 Da PI: 6.3032

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10023255m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.5	3.1e-13	69	108	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++E++l+++++++lG++ W++Ia +++ gRt++ +k++w++ Ciclev10023255m 69 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNGIKNYWNTC 108 89*************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-7	18	48	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.86E-20	24	105	IPR009057	Homeodomain-like
SMART	SM00717	4.9	26	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-6	50	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.483	59	113	IPR017930	Myb domain
SMART	SM00717	6.6E-11	63	111	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-12	69	108	IPR001005	SANT/Myb domain
CDD	cd00167	6.11E-9	69	107	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-18	73	110	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MRNPSSSSSS DGTKKITPCC SKVGIKKGPW TPEEDEILSN YIKREGEGYC RLRWMNYLRP 60 SIKRGHIAPD EEDLILRLHR LLGNRWSLIA GRIPGRTDNG IKNYWNTCLR KKLISQGIDP 120 TTHKPLIFNQ VVLHDQLASS SSTSNPNTPS LEIMEEAGVR STHQAAAANF TTNYNIPIDG 180 GFMMGSLLPS SHGHGYNCIE DYIDNCDADT FSSFLDSLVN DDDFMNHINE QQQQSSTSSY 240 NNIGTIDWEF ADVLSKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-20	27	113	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Siliques. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024043308.1	1e-167	LOW QUALITY PROTEIN: transcription repressor MYB5
Swissprot	Q38850	4e-65	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	V4TY93	0.0	V4TY93_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006443445.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-65	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Ciclev10023255m
Entrez Gene	18047333

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]