PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023285m
Common NameCICLE_v10023285mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 246aa    MW: 28366.2 Da    PI: 10.7038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023285mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-1790135147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
  Ciclev10023285m  90 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSEKSCRLRWFNQ 135
                      899*****************************.***********996 PP
2Myb_DNA-binding56.85e-18142185146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Ciclev10023285m 142 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAIKNHWHV 185
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.49285136IPR017930Myb domain
SMARTSM007171.6E-1489138IPR001005SANT/Myb domain
PfamPF002493.5E-1690135IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-2890183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-2691143IPR009057Homeodomain-like
CDDcd001678.09E-1393134No hitNo description
PROSITE profilePS5129427.673137191IPR017930Myb domain
SMARTSM007174.9E-15141189IPR001005SANT/Myb domain
PfamPF002491.3E-14142184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-21144190IPR009057Homeodomain-like
CDDcd001678.61E-7153184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MNFMAPSSHL SLSNTFGTKN PETGFQILSP CPMEINKKPW EARRICVEER DGVFSVHKNK  60
GLSLDLGEEV EDVIKRPVSG KNGHTKLCTR GHWRPAEDAK LKELVAQYGP QNWNLIAENL  120
EGRSEKSCRL RWFNQLDPRI NRRAFSEEEE ERLLAAHRLY GNKWAMIARL FPGRTDNAIK  180
NHWHVIMARK QKEQSSIYRR RKPSSGPFQN NSININNARK QKEQSSIYRR RKPSSGPFQN  240
NSINS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-32881905107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199221RRKPSSGPFQNNSININNARKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442704.20.0transcription factor CSA, partial
TrEMBLV4VS780.0V4VS78_9ROSI; Uncharacterized protein
STRINGXP_006442704.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-67myb domain protein 105