PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023292m
Common NameCICLE_v10023292mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 198aa    MW: 23060.4 Da    PI: 6.2519
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023292mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.83.6e-1821286127
              NAM   6 rFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      +++P+de+ v++yL +k+++ + ++ +  +++ ++y + +Pw++ +++ +    + ++ yfF++ +kk+a+g+r  r + sg+W+    ++ v+
  Ciclev10023292m   2 KYQPSDEQAVQFYLFNKISEIPSPVLDYfVRNENLYGSkDPWRIWMQFGGpnleDGEDFYFFARLKKKSANGSRIDRRVCSGTWQGEDASEVVV 95 
                      89********************999888799999997669****753333333356688**************************999988888 PP

              NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                      s+ ++e++  kk + + kg++ +     W++ ey+
  Ciclev10023292m  96 SRkSREKIDSKKRFRYEKGESLH--DGCWIIYEYA 128
                      8757788*********9887777..899******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-181134IPR003441NAC domain
PfamPF023656.7E-111128IPR003441NAC domain
PROSITE profilePS5100520.8751146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
YKYQPSDEQA VQFYLFNKIS EIPSPVLDYF VRNENLYGSK DPWRIWMQFG GPNLEDGEDF  60
YFFARLKKKS ANGSRIDRRV CSGTWQGEDA SEVVVSRKSR EKIDSKKRFR YEKGESLHDG  120
CWIIYEYARN PSLKNGEPTA AGMENSGKKR KLDENSFDAT NSNVLLQSLE ENHQQSQTQQ  180
DPHHLELSDH HQNMQDSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042722.19e-81NAC transcription factor NAM-1
TrEMBLV4VME61e-147V4VME6_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006440759.11e-148(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-12NAC-domain protein 101