PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023342m
Common NameCICLE_v10023342mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 232aa    MW: 25843.6 Da    PI: 9.8249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023342mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000354466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C + F++   L  H+++H
  Ciclev10023342m 44 YNCSFCRREFRSAQALGGHMNVH 66
                     89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-64170No hitNo description
PROSITE profilePS5015711.1574471IPR007087Zinc finger, C2H2
PfamPF139124.5E-64467IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
VLMNKKEVSM EWVKEKWECE KCSCSEAQHG QSSCGLIVWP PKNYNCSFCR REFRSAQALG  60
GHMNVHRRDR ARLRMLPPPL LQYRNPNPIP SFAASSTSSS SLSSPPSNKL LLPGPDPATY  120
KPKPLVSANL NSLSSSPSSA AFTNEYKKRL LEECPHQQIN TLSSTLPSGD YLRKKKNMRA  180
AFGAGNSKGY APKREIDVLR KKEELAMSLE LEMGLKDTKE SVDLELRLGY P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-123966229superman protein
2l1o_A4e-123966229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386218.21e-168zinc finger protein 11
TrEMBLA0A067FM451e-161A0A067FM45_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4VV391e-168V4VV39_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006443884.11e-169(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.16e-17zinc finger protein 11