PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023440m
Common NameCICLE_v10023440mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 343aa    MW: 38369.7 Da    PI: 7.9704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023440mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+d++k++G g+W++ +++  + R++k+c++rw +yl
  Ciclev10023440m 14 RGPWTPEEDQKLLDYIKKHGHGSWRSLPEKADLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding51.71.9e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++  E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++
  Ciclev10023440m  67 RGKFSLHEEQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129424.794965IPR017930Myb domain
SuperFamilySSF466892.88E-3011108IPR009057Homeodomain-like
SMARTSM007178.2E-141363IPR001005SANT/Myb domain
PfamPF002491.6E-161461IPR001005SANT/Myb domain
CDDcd001671.60E-111661No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2665116IPR009057Homeodomain-like
SMARTSM007175.1E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129419.69666116IPR017930Myb domain
PfamPF002494.2E-1567111IPR001005SANT/Myb domain
CDDcd001673.73E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRSPCSDTN GLKRGPWTPE EDQKLLDYIK KHGHGSWRSL PEKADLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLHEEQTIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HIKKRLARMG  120
IDPMTHRPKI PSLASADGDP KKASNLSHMA QWENARLEAE ARLVRESKPK QNDQQNSEGP  180
VSASANKQLN RMATTYTSTR PRCLDILKAW ESTICNINGS IISFGDGSYL ESPPSILQFS  240
EDRQQAAAMS SLENMNKNLD FVYDAGGSAG DAWNIVGSSS VNNAGDENFI EGFSCDHHMN  300
NNNNNNNIGG DQESSNNYCW NELISVVECR QPNTTPFYTS GC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440626.10.0transcription factor MYB106
SwissprotQ9LE635e-99MY106_ARATH; Transcription factor MYB106
TrEMBLV4TVC80.0V4TVC8_9ROSI; Uncharacterized protein
STRINGXP_006440626.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3315122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.13e-98myb domain protein 106