PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023519m
Common NameCICLE_v10023519mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 166aa    MW: 19130.5 Da    PI: 8.2297
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023519mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.6e-1022462348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W+tIa++++ gRt++++k++w+++l
  Ciclev10023519m 22 RWSTIAARLP-GRTDNEIKNYWHSHL 46
                     5*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.188150IPR017930Myb domain
SuperFamilySSF466899.36E-92053IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-132163IPR009057Homeodomain-like
CDDcd001671.35E-62246No hitNo description
PfamPF002492.8E-72246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MFYTYSLDPL RWRVILHCKS FRWSTIAARL PGRTDNEIKN YWHSHLKKRL KQNLISAKQQ  60
CDIVQALLHS DHNSNATVHK PVCNSTHQGI QNHPQDTPNF PPKSCNESTY IASENLPGIE  120
GKYETRDFVA MGKMNYENCS NVMEFWYNIL MNSGNSIEMQ ENSGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551LKKRLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442695.21e-103transcription factor MYB4
TrEMBLV4VS711e-123V4VS71_9ROSI; Uncharacterized protein
STRINGXP_006442694.11e-123(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2279133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-14myb domain protein 14