PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023546m
Common NameCICLE_v10023546mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 160aa    MW: 17893.9 Da    PI: 9.701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023546mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-182171255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a+++a+ +++g
  Ciclev10023546m 21 RYRGIRRRP-WGKFAAEIRDPTRNG--ARLWLGTFSTAEEAARAYDRAAFAFRG 71
                     69*******.**********98887..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-232180IPR016177DNA-binding domain
CDDcd000181.89E-302180No hitNo description
SMARTSM003803.0E-372185IPR001471AP2/ERF domain
PROSITE profilePS5103225.4882179IPR001471AP2/ERF domain
PfamPF008478.1E-132171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-312180IPR001471AP2/ERF domain
PRINTSPR003673.2E-112233IPR001471AP2/ERF domain
PRINTSPR003673.2E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEASEGGGKN KEKGRSVSKV RYRGIRRRPW GKFAAEIRDP TRNGARLWLG TFSTAEEAAR  60
AYDRAAFAFR GRSAILNFPN ESQYRCESSS SSFPSSSSSP LICYDAGGDG STESREKEAE  120
VIEFEYFDNK LLEKLLEPSD QDRQGTTRIK TMLHRKPNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-281381674Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044820.15e-92ethylene-responsive transcription factor ERF098
RefseqXP_024954059.15e-92ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV4T9V21e-112V4T9V2_9ROSI; Uncharacterized protein
STRINGXP_006443853.11e-113(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.19e-28ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]