PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023593m
Common NameCICLE_v10023593mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 204aa    MW: 22773.2 Da    PI: 6.7894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023593mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.2e-12113155146
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 
                      s+y+GVr ++ +g+W  eI+ p++n  +++++lg+f+ +e+A  a+
  Ciclev10023593m 113 SKYRGVRPRP-WGKWTGEIKNPNKN--TAQVWLGTFDMPEDAGSAY 155
                      89*****999.********999665..5*************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.18E-23113174No hitNo description
SuperFamilySSF541716.15E-18113173IPR016177DNA-binding domain
PfamPF008472.8E-7113155IPR001471AP2/ERF domain
PROSITE profilePS5103220.086114172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-23114173IPR001471AP2/ERF domain
SMARTSM003801.0E-23114178IPR001471AP2/ERF domain
PRINTSPR003671.3E-8115126IPR001471AP2/ERF domain
PRINTSPR003671.3E-8138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTGGVGRKRE ESSSFLKIAF IQFLENLCRF NHHNLKLHFS LQFKSLNSNS NIQQQILDQS  60
MAASAGNSSS TETVNSCLEL ISSSNPLDDL FDQPDYESEP TTPDTIRQKA VRSKYRGVRP  120
RPWGKWTGEI KNPNKNTAQV WLGTFDMPED AGSAYGPAPF QIHGQNAELN FPQTRESHEE  180
KHFRESACAN TYSGSILFSN PLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19115172360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386027.12e-89ethylene-responsive transcription factor 13-like
RefseqXP_015386028.12e-89ethylene-responsive transcription factor 13-like
RefseqXP_024043251.12e-89ethylene-responsive transcription factor 13
TrEMBLV4U2161e-150V4U216_9ROSI; Uncharacterized protein
STRINGXP_006442921.11e-151(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3316022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-23ethylene responsive element binding factor 2