PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023601m
Common NameCICLE_v10023601mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 145aa    MW: 17036.7 Da    PI: 10.071
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023601mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.99e-1181121128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lp Gf+F+P+deel+++yLkkkv g  + l+e  i++   y++    L+      ++++yfF++ +kk+++g+ + +++            +v+
  Ciclev10023601m   8 LPHGFQFRPSDEELIKHYLKKKVLGILILLAEYfIRD---YSHGGPLLN-----VDEDLYFFTQLKKKSSKGELTAKSVP-----------PVV 82 
                      699**********************997775543554...444444454.....46899********9998877766533...........566 PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +  + k + f k  +    +  W+mhey+l
  Ciclev10023601m  83 L---GKGRMPKWFRFEK--KGCEAHGAWIMHEYTL 112
                      6...2346788888873..3333467888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-175129IPR003441NAC domain
PROSITE profilePS5100514.9698130IPR003441NAC domain
PfamPF023651.3E-139112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MQEHRPFLPH GFQFRPSDEE LIKHYLKKKV LGILILLAEY FIRDYSHGGP LLNVDEDLYF  60
FTQLKKKSSK GELTAKSVPP VVLGKGRMPK WFRFEKKGCE AHGAWIMHEY TLHFPKNQAT  120
NYVLCRLRKN QPTGQDKEYG SENKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387713.13e-67NAC transcription factor 56-like
RefseqXP_024041996.18e-69NAC domain-containing protein 83
TrEMBLA0A2H5PX491e-105A0A2H5PX49_CITUN; Uncharacterized protein (Fragment)
STRINGXP_006441943.11e-105(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.16e-07NAC domain containing protein 46