PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023677m
Common NameCICLE_v10023677mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 234aa    MW: 26121.6 Da    PI: 4.9984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023677mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19105155355
              AP2   3 ykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g++ AeIrdp++ ng  +r++lg+++t+e+ a a+++a+ +++g
  Ciclev10023677m 105 YRGVRRRP-WGKFTAEIRDPNKkNG--ARVWLGTYDTPEGDALAYDRAAFNMRG 155
                      9*******.**********866566..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-32104169IPR001471AP2/ERF domain
PROSITE profilePS5103222.655104163IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-19104164IPR016177DNA-binding domain
PfamPF008473.1E-12105155IPR001471AP2/ERF domain
CDDcd000183.85E-29105165No hitNo description
PRINTSPR003673.4E-13105116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-28105164IPR001471AP2/ERF domain
PRINTSPR003673.4E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MYTENSVSDS EFAILESIRQ YLLNDDFDNV PSETSISVND DPLINSPTNS SFSNFSNEME  60
LKAYEALNDA VNGEWISFGQ RRQLDDESEG TRGATTHESH VRVFYRGVRR RPWGKFTAEI  120
RDPNKKNGAR VWLGTYDTPE GDALAYDRAA FNMRGSKAKL NFPHLIGSNV APPLRVTKKR  180
GSSSSSNYTL HLQSESPNSK RRKDIDSSSA ANNEAGSLCF ASDDDDFCIC FYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-26105163360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445417.11e-174pathogenesis-related genes transcriptional activator PTI5
RefseqXP_015381357.11e-174pathogenesis-related genes transcriptional activator PTI5-like
TrEMBLV4TYJ21e-173V4TYJ2_9ROSI; Uncharacterized protein
STRINGXP_006445417.11e-173(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-40ethylene-responsive element binding factor 13