PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023742m
Common NameCICLE_v10023742mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 127aa    MW: 14113.7 Da    PI: 11.0106
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023742mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.8e-1741124284
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                      fYn+YAk +GFsv+++++++sk+n+ i ++++vC ++gk+ +++    +  +r r+  r gC  kl+v k+k gk++v  ++++
  Ciclev10023742m  41 FYNKYAKGAGFSVKINSNRRSKDNNDILRKEYVCFRKGKSLQSSACvGSGLKRCRPIVRDGCGGKLVVVKSKLGKYMVRIFVEK 124
                      ****************************************99888745667889************************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1541124IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MPKRRTPMKK STTALAKLPT TLILLPHKGQ GFDNLEEAFA FYNKYAKGAG FSVKINSNRR  60
SKDNNDILRK EYVCFRKGKS LQSSACVGSG LKRCRPIVRD GCGGKLVVVK SKLGKYMVRI  120
FVEKLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389364.12e-33protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2H5QAA28e-87A0A2H5QAA2_CITUN; Uncharacterized protein
TrEMBLV4TU838e-87V4TU83_9ROSI; Uncharacterized protein
STRINGXP_006442060.11e-87(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.14e-10FAR1 family protein