PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023756m
Common NameCICLE_v10023756mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 475aa    MW: 52890.9 Da    PI: 4.4424
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023756mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.2e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede+l ++++  G ++W++ +++ g+ R++k+c++rw +yl
  Ciclev10023756m 14 KGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding55.91e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ TteE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
  Ciclev10023756m  67 RGNITTEEEETIIKLHASLGNR-WSVIASHLP-GRTDNELKNYWNTHL 112
                      7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.111961IPR017930Myb domain
SuperFamilySSF466895.74E-2711108IPR009057Homeodomain-like
SMARTSM007176.1E-101363IPR001005SANT/Myb domain
PfamPF002499.7E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-201568IPR009057Homeodomain-like
CDDcd001673.39E-71661No hitNo description
PROSITE profilePS5129424.51962116IPR017930Myb domain
SMARTSM007172.2E-1666114IPR001005SANT/Myb domain
PfamPF002494.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2469116IPR009057Homeodomain-like
CDDcd001671.26E-780112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGRTPCCEKV GLKKGKWTAK EDEILTKYIQ ANGIESWRSL PKKAGLLRCG KSCRLRWVNY  60
LRTDLRRGNI TTEEEETIIK LHASLGNRWS VIASHLPGRT DNELKNYWNT HLSKKIHTFQ  120
GPVGGETLSL PKMVDVASAS AAIDKRKAGK TSRCATKKNK SYIINKDDVT SNVPTQRPQV  180
NGSTSTDDIG NVSAQRPEAY ASTDVGYVST RRPQVNISID NDANVSTPSH RPEENVSIEE  240
AATPLPATPA QEKEALPRTV IEGCVDLDPY AEDEEILMDP IASNPCQETG LVSSEKRESF  300
VVCSGTEETT MNISILCLCP RGEEEQKETE VLAPFDEDID AETLCFNNLT DLTEVWTLLE  360
ETENCAKNII REETEIGTRI VANNMAKSEE LESANLGATE ESVACSSVTS FFDDNNFDWD  420
WESVVQGHDR QCDEENNIFS RPWETDNMAE RKSHEIGEVL DYDMPNDMVA WLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-211211625128MYB TRANSFORMING PROTEIN
3zqc_A4e-21141182105MYB3
3zqc_D4e-21141182105MYB3
3zqc_G4e-21141182105MYB3
3zqc_J4e-21141182105MYB3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444458.10.0transcription factor MYB41
TrEMBLA0A067HGI60.0A0A067HGI6_CITSI; Uncharacterized protein
TrEMBLV4TBM60.0V4TBM6_9ROSI; Uncharacterized protein
STRINGXP_006444458.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2279534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-66myb domain protein 111