PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10023770m

Common Name

CICLE_v10023770mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 260aa MW: 29082.4 Da PI: 9.6971

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10023770m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.2e-11	97	144	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++N+ f L ++P k ++Ka++Le +++++k+Lq Ciclev10023770m 97 QEHVIAERKRREKMNQQFIALSAVIPGI-----KQMNKASVLEGTIKHLKELQ 144 6799********************97.....57***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.723	94	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-9	97	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-14	98	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	98	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.21E-10	99	148	No hit	No description
SMART	SM00353	7.5E-13	100	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDVDQDSTFI HQYQGNSQSN STTHGSMSFS GLISFQDTDS LASYYSQMSN PNSEYYCTIK 60 SEDKRASDEN LMAMKTRIVN KPGQGNRVAS RSPLQAQEHV IAERKRREKM NQQFIALSAV 120 IPGIKQMNKA SVLEGTIKHL KELQERGKKL VEQTKRKAPE SVVSVKGSQQ TLPDIVVRVS 180 DNNVLIRIHC EKQNIGFISN IVSEIEKLHL VVINSRTIPL GNYALDITVV AQMEVEFCLT 240 VKELVKNLRL ALSKFIKLG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	107	ERKRRE
2	103	108	RKRREK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006441040.1	0.0	transcription factor NAI1
Swissprot	Q9T072	2e-45	BH025_ARATH; Transcription factor bHLH25
TrEMBL	V4TRE5	0.0	V4TRE5_9ROSI; Uncharacterized protein
STRING	XP_006441040.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22965	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	7e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10023770m
Entrez Gene	18046464