PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024022m
Common NameCICLE_v10024022mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 104aa    MW: 11825.4 Da    PI: 9.9031
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024022mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.38.1e-161691276
             FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkw 76
                     fYn+YAke+G+++r+++s+ksk+n+ei ++++vC ke k+ +++    + ++r+r+  + gC akl v k+k gk+
  Ciclev10024022m 16 FYNKYAKEAGYNIRIHSSQKSKDNNEILRKEYVCFKERKSLQSNACvGSGSKRRRPIVHDGCGAKLAVVKSKYGKY 91
                     **************************************99888776567788899*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-141691IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
PYKGQEFDNL EEVFAFYNKY AKEAGYNIRI HSSQKSKDNN EILRKEYVCF KERKSLQSNA  60
CVGSGSKRRR PIVHDGCGAK LAVVKSKYGK YVSGFDNRIT NCF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389364.17e-27protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4TRA22e-69V4TRA2_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006440990.13e-70(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-11FAR1-related sequence 5