PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024116m
Common NameCICLE_v10024116mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 130aa    MW: 14728.4 Da    PI: 10.6956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024116mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.27.2e-141094184
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84
                     f k+lt+ d +++  +++  k ++++   g  ++  ++   ede+g++W ++li+rk++ +  v+++GW++Fv++++Lk  D v+F  
  Ciclev10024116m 10 FSKTLTKTDINNK--FSVKSKSLASFppfG-AQTYAQDFNAEDEEGKKWLFRLIIRKGKHKkPVISAGWRSFVRQKKLKIDDKVLFFK 94
                     5666655555544..577777777778854.44566799**************996666556*****************999988863 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-20598IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-13697IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-139111No hitNo description
SMARTSM010199.4E-510115IPR003340B3 DNA binding domain
PfamPF023627.6E-111294IPR003340B3 DNA binding domain
PROSITE profilePS508639.55949115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MGKTNEKCLF SKTLTKTDIN NKFSVKSKSL ASFPPFGAQT YAQDFNAEDE EGKKWLFRLI  60
IRKGKHKKPV ISAGWRSFVR QKKLKIDDKV LFFKEQNEAE IATGGKYKIK VQKAVKVFKA  120
IMGYVPCMG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2H5NIK83e-89A0A2H5NIK8_CITUN; Uncharacterized protein
TrEMBLV4T8U73e-89V4T8U7_9ROSI; Uncharacterized protein
STRINGXP_006443453.15e-90(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16920512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-12ARF family protein