PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024178m
Common NameCICLE_v10024178mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Whirly
Protein Properties Length: 70aa    MW: 7773.79 Da    PI: 5.744
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024178mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly24.25.7e-08127111137
           Whirly 111 vtnslvkgnesfsvPvskaefavlrsl 137
                      v n+++k+ne+f+vPvs aefav++++
  Ciclev10024178m   1 VANNILKTNERFVVPVSTAEFAVMKTA 27 
                      67999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.2E-15149IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.28E-17168IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.6E-4127IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
VANNILKTNE RFVVPVSTAE FAVMKTACSF ALPHLMGWDR LTNQLPRSST ESSSSSKVDQ  60
QFLDLEWDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A4e-19144126169StWhy2
3n1i_A4e-19144126169protein StWhy2
3n1j_A4e-19144126169Protein StWhy2
3n1k_A4e-19144126169protein StWhy2
3n1l_A4e-19144126169protein StWhy2
3r9y_A4e-19144126169Why2 protein
3r9z_A4e-19144126169Why2 protein
3ra0_A4e-19144126169Why2 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478304.11e-36single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
SwissprotD9J0347e-23WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLV4TTI71e-43V4TTI7_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006441815.12e-44(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-20WHIRLY 2