PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024200m
Common NameCICLE_v10024200mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 140aa    MW: 16453.9 Da    PI: 10.8593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024200mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.77.3e-13279955128
              NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++yfF++ +kk+ +g+r    + +g+W+     k v+s+ +++++g kk + + k ++p   +  W+mhey+l
  Ciclev10024200m  27 GEDLYFFTRLKKKSVNGSRIDHRVGTGTWQGEDVGKVVVSRnSRKKIGFKKRFRYEKDKSPY--NGCWIMHEYSL 99 
                      4678******************99******9999999988867788*********9666666..99*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.5951121IPR003441NAC domain
SuperFamilySSF1019412.88E-1624120IPR003441NAC domain
PfamPF023652.1E-82999IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MRTENLYGSK ELWQIWRQFG RLDLEYGEDL YFFTRLKKKS VNGSRIDHRV GTGTWQGEDV  60
GKVVVSRNSR KKIGFKKRFR YEKDKSPYNG CWIMHEYSLN PSLLPKNLRS SDLVLCRIKK  120
NGEPRQPGRK IQGKRESRA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444440.15e-99NAC domain-containing protein 83
TrEMBLV4U1021e-97V4U102_9ROSI; Uncharacterized protein
STRINGXP_006444440.12e-98(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-11NAC domain containing protein 47