PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10024201m

Common Name

CICLE_v10024201mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 182aa MW: 20803.1 Da PI: 9.8119

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10024201m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	6.9e-10	14	64	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +E++RRd+++s ++L +l+P+ ++a++ ls + L +A+ +Ik+L+ Ciclev10024201m 14 KNIEKNRRDHMKSLCFKLFSLVPShHFRASKSMLSQEDRLDLACCHIKQLR 64 679*******************999999999**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.137	8	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-10	12	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0074	14	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-7	14	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-10	14	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MKKRSDKSSK PERKNIEKNR RDHMKSLCFK LFSLVPSHHF RASKSMLSQE DRLDLACCHI 60 KQLRERIDKL KRMKEQAMKS IKPNSNNNIM DETNNICSNL PVVELRDLGY SIEVVLISGV 120 QRNFMLYEVI SILEEEGAQV VSASFSTIGD KIFHTVRAQA KISRLGVETS IACQRLHDLV 180 D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006442006.1	1e-131	transcription factor bHLH162 isoform X2
TrEMBL	V4TZB1	1e-130	V4TZB1_9ROSI; Uncharacterized protein
STRING	XP_006442006.1	1e-130	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	7e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10024201m
Entrez Gene	18048774