PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10024302m

Common Name

CICLE_v10024302mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 183aa MW: 20921.5 Da PI: 6.8676

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10024302m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.3	2.1e-12	47	115	20	90
FAR1 20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+ +++ i+++++vC keg+++++k + +r++ r gC akl+v k++ +k++v+ +++eHnH+l+ Ciclev10024302m 47 AKEGESNDIIRKEYVCLKEGQARQSKVV--NCKRRHGIIRGGCSAKLVVVKSEFDKYMVHIFVEEHNHALS 115 44456777***********9998766..88999999*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-10	48	115	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MNAQNVAGQS NCEDSLYIPE VALDRKPYKG QEFDTLDDAY EFYNKYAKEG ESNDIIRKEY 60 VCLKEGQARQ SKVVNCKRRH GIIRGGCSAK LVVVKSEFDK YMVHIFVEEH NHALSSPRRK 120 SLSQQLAAVN IPTCQQISLF ELQAEGLQNM GSVHRDFYNN DRNLRNELKG HDADMLYEHF 180 SV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY336943	2e-58	AY336943.1 Poncirus trifoliata NBS-LRR-type disease resistance protein-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015389364.1	1e-105	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	V4TZE7	1e-133	V4TZE7_9ROSI; Uncharacterized protein
STRING	XP_006442061.1	1e-134	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24003	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-13	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Ciclev10024302m
Entrez Gene	18046756