PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024310m
Common NameCICLE_v10024310mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 311aa    MW: 34593.3 Da    PI: 4.4034
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024310mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-1970123356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +R  +t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Ciclev10024310m  70 NRPLLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 123
                      5778899**********************************************9 PP
2HD-ZIP_I/II122.42.2e-3974159691
      HD-ZIP_I/II   6 lskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      l+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+e+L++e+
  Ciclev10024310m  74 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEV 159
                      899********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-2045127IPR009057Homeodomain-like
PROSITE profilePS5007117.4165125IPR001356Homeobox domain
SMARTSM003892.2E-1967129IPR001356Homeobox domain
PfamPF000469.6E-1770123IPR001356Homeobox domain
CDDcd000868.24E-1871126No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2071133IPR009057Homeodomain-like
PRINTSPR000311.3E-596105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5105121IPR000047Helix-turn-helix motif
PfamPF021831.2E-16125167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAGGRMYNQN SSSGGGTSSL SFLIQSQKGS CSNSQNLDAS FLSGPSPSPF LGPRSMVSFE  60
DVHLANGSNN RPLLTVDQVQ FLEKSFEVEN KLEPERKIQL AKDLGLQPRQ VAIWFQNRRA  120
RWKTKQLEKD YDVLQNSYNS LKADYDNLFK EKEKLKAEVL TLTDKLQVKE KEGKNTELPV  180
VNKTLSQEPP QISEPVADSA ASEGEVCKAS VVACKQEDIS SAKSDIFDSD SPNYTDGVHS  240
SLLETCDSSY VFEPEQSDLS QDEDDSLSKN VLLPPYVFPK LEETEYSDPP TNSCNFGFPI  300
EDHAFWSWSF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920820.0KR492082.1 UNVERIFIED: Citrus sinensis clone 170-1k mRNA sequence.
GenBankKR4921500.0KR492150.1 UNVERIFIED: Citrus maxima clone 170-1 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476659.10.0homeobox-leucine zipper protein HAT5
TrEMBLV4THQ70.0V4THQ7_9ROSI; Uncharacterized protein
STRINGXP_006439657.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-45homeobox 1