PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024318m
Common NameCICLE_v10024318mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 171aa    MW: 18839.6 Da    PI: 9.2859
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024318mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.4e-161458145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k+ie +  r vtfskRr+g++KKA+E    ++ ++av++fs+ g+
  Ciclev10024318m 14 KKIEKQKARMVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGN 58
                     689***************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.208666IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-21665IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-21779IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-13828IPR002100Transcription factor, MADS-box
PfamPF003194.5E-201560IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-132843IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-134364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAPTGKGKLK IEIKKIEKQK ARMVTFSKRR QGLFKKAQEY ANITGSQIAV LVFSPAGNPY  60
VHGSPSFDAV TDKFLSVHGG ASSSGQVGAH HNEADVCRTP TPFHLVLQNH HNEANVCRGF  120
LMALEDKIKR CRSAEDLSAV KAELEEVRVK VLERLKHIEE DEFVTSLLNC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442528.11e-124agamous-like MADS-box protein AGL29
TrEMBLV4T6A01e-123V4T6A0_9ROSI; Uncharacterized protein
STRINGXP_006442528.11e-124(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2014436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-18AGAMOUS-like 29