PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024319m
Common NameCICLE_v10024319mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 199aa    MW: 21343.6 Da    PI: 5.2477
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024319mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.7e-07447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e+ e++  C  ++  lC +C ++ H        H++v+l
  Ciclev10024319m  4 QCEVCEKAEAEVLCCADEAVLCSNCDVKVHTAnklsrkHQRVSL 47
                     7*****************************55788889998875 PP
2zf-B_box315.3e-1067109238
         zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                      + + C+ ++e +  +fC +++  lC++C +++Hk       H+
  Ciclev10024319m  67 QLPSCDICQERNGYFFCLEDRAILCRQCDVSIHKAspfqssHQ 109
                      7899******99*********************8777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.926147IPR000315B-box-type zinc finger
PfamPF006433.1E-5447IPR000315B-box-type zinc finger
CDDcd000216.50E-6547No hitNo description
SuperFamilySSF578453.43E-565105No hitNo description
SMARTSM003364.5E-1366113IPR000315B-box-type zinc finger
PROSITE profilePS501198.95866113IPR000315B-box-type zinc finger
PfamPF006436.2E-867109IPR000315B-box-type zinc finger
CDDcd000213.21E-869113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MKLQCEVCEK AEAEVLCCAD EAVLCSNCDV KVHTANKLSR KHQRVSLLKH NAAAASSSSS  60
SSPSASQLPS CDICQERNGY FFCLEDRAIL CRQCDVSIHK ASPFQSSHQR FLIGGIKVAL  120
ESSADNNSRT SETYFPTAAA EESRQAMTMD SSTGSGSGLA AAHLATAASS CSWQLDDLLG  180
NDDFNYHDFS DTESSRIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478357.11e-108B-box zinc finger protein 23-like
TrEMBLV4VQ441e-143V4VQ44_9ROSI; Uncharacterized protein
STRINGXP_006441859.11e-144(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.19e-47light-regulated zinc finger protein 1