PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024340m
Common NameCICLE_v10024340mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 85aa    MW: 9155.59 Da    PI: 10.9107
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024340mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.21.4e-151357145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k+ie +  r vtfskRr+ ++KKA+E    ++ ++av++fs+ g+
  Ciclev10024340m 13 KKIEKQKARMVTFSKRRQSLFKKAQEYANITGSQIAVLVFSPAGN 57
                     689***************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.339565IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-20564IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-22677IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-13727IPR002100Transcription factor, MADS-box
PfamPF003199.9E-201459IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-132742IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-134263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MAPGKGKPKI EIKKIEKQKA RMVTFSKRRQ SLFKKAQEYA NITGSQIAVL VFSPAGNPYV  60
HGSPSFDAVI DKFLSVNGGA SSSGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440987.24e-56agamous-like MADS-box protein AGL61
TrEMBLV4TLG52e-54V4TLG5_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006440987.14e-55(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2014436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-17AGAMOUS-like 61