PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10024422m

Common Name

CICLE_v10024422mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 163aa MW: 18599.5 Da PI: 8.9269

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10024422m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.1e-11	6	53	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR+++ + + Lr+llP ++K s ++ +Av+YIk+Lq Ciclev10024422m 6 RDIERHRRQEMSTLYRSLRSLLPLeY---LKGKRSMSDHMNEAVNYIKNLQ 53 679*******************77...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.836	1	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.54E-8	2	57	No hit	No description
SuperFamily	SSF47459	8.64E-14	2	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-10	5	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-8	6	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-4	6	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MKIMRRDIER HRRQEMSTLY RSLRSLLPLE YLKGKRSMSD HMNEAVNYIK NLQNRIQKLS 60 EKRDELRRLS NSSSSPYYST TSESECSQTH INLEDSVTVR PCLAGVEVAI NTSFRKGIPL 120 SQVVALLAEE GLTVVNCIST KINERLLHNI ESEVIMLLCM GL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440484.2	1e-107	transcription factor bHLH36
TrEMBL	V4VLT6	1e-113	V4VLT6_9ROSI; Uncharacterized protein
STRING	XP_006440484.1	1e-114	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10024422m
Entrez Gene	18049145