PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024463m
Common NameCICLE_v10024463mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 234aa    MW: 27060.4 Da    PI: 10.1058
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024463mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.14.2e-171150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i+n+s r+ tf kR++g+lKK +EL +LC+++v+ iifs+
  Ciclev10024463m 11 ISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSP 50
                     9**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.689149IPR002100Transcription factor, MADS-box
CDDcd002661.37E-21285No hitNo description
SuperFamilySSF554555.62E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-10323IPR002100Transcription factor, MADS-box
PfamPF003195.3E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTRKKVKLAY ISNDSARKAT FKKRKKGLLK KVSELKTLCG IDVCAIIFSP YDDQPEIWPS  60
PLGVQRVLSR FKKMPEMEKS KKMVSQDSFL KQRIAKAYEQ LKKQRKDNRE KEMERVMFQS  120
LTGSNVFLNM NMIGLNDLGL QIEHNIREIC RRMETLNNIA AMARPSNEEP SQQVEKSFGF  180
DGQMNMEAMQ KQQWLVDLMS TPPQQHFGFG GEEVMQPFAD TINNNLWPNP FYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYISNDSARKATFKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441475.11e-175agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-62AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4TSN01e-173V4TSN0_9ROSI; Uncharacterized protein
STRINGXP_006441475.11e-174(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-51AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]