PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10024664m

Common Name

CICLE_v10024664mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 497aa MW: 55687.1 Da PI: 9.5129

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10024664m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.6	4.4e-20	81	168	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt +e+laLi+a+ ++ +l+rg+l+ +W++vs+++ + g ++s++qC++k+e+l+kry+ +k+++ + + +s++ +f l+ Ciclev10024664m 81 CWTTDETLALINAYGARWLSLNRGNLRTSDWDAVSSAVseSTPGASKSSIQCRHKIEKLRKRYRSEKQRSLSFPGRFVSSWDLFPLLD 168 8***********************************5555699**********************9998888899999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.3E-20	80	170	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MIVAEWLRFA PHPAHSSLIP SPTQSLRLAP PPILFTRNND NDNNHANHLL LLLLFFSNSL 60 LCAPHPPTMP TPSTKRVPPP CWTTDETLAL INAYGARWLS LNRGNLRTSD WDAVSSAVSE 120 STPGASKSSI QCRHKIEKLR KRYRSEKQRS LSFPGRFVSS WDLFPLLDSM NFGSSSAPGL 180 GNQSRELVDQ KVVDVTEFRV KTRNDKSLMS KYGNIDVDFN PDFALRSGLM GNYENIDFGD 240 DFGGLDSRAK DYLKVNGDFG VGFGMKMGVD DTYFVTPQGF RLKSYENIDD GKSCPRLDFN 300 HGVDGFPVRT FGDRISVPPP GFKAENFVSV EANFKPNAYY DDHADYVVAK GSGSEFYAKS 360 LGDGDFVPVG TRLKNYGRVN GNWNATVDLR GMNVHDSSSR LRFGKKNGDG GVKRDLDPFE 420 ELVSSITLLT EKFVKVEKMK MEMARETQKM RMEMEKKHNQ MILESQRHIF DSFVSGLLEN 480 KRKKKVKVYG ASPKTT*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MIVAEWLRFA PHPAHSSLIP SPTQSLRLAP PPILFTRNND NDNNHANHLL LLLLFFSNSL  60
LCAPHPPTMP TPSTKRVPPP CWTTDETLAL INAYGARWLS LNRGNLRTSD WDAVSSAVSE  120
STPGASKSSI QCRHKIEKLR KRYRSEKQRS LSFPGRFVSS WDLFPLLDSM NFGSSSAPGL  180
GNQSRELVDQ KVVDVTEFRV KTRNDKSLMS KYGNIDVDFN PDFALRSGLM GNYENIDFGD  240
DFGGLDSRAK DYLKVNGDFG VGFGMKMGVD DTYFVTPQGF RLKSYENIDD GKSCPRLDFN  300
HGVDGFPVRT FGDRISVPPP GFKAENFVSV EANFKPNAYY DDHADYVVAK GSGSEFYAKS  360
LGDGDFVPVG TRLKNYGRVN GNWNATVDLR GMNVHDSSSR LRFGKKNGDG GVKRDLDPFE  420
ELVSSITLLT EKFVKVEKMK MEMARETQKM RMEMEKKHNQ MILESQRHIF DSFVSGLLEN  480
KRKKKVKVYG ASPKTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440162.1	0.0	uncharacterized protein LOC18049396
TrEMBL	V4TJ35	0.0	V4TJ35_9ROSI; Uncharacterized protein
STRING	XP_006440162.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-31	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Ciclev10024664m
Entrez Gene	18049396