PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10024764m

Common Name

CICLE_v10024764mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CAMTA

Protein Properties

Length: 1093aa MW: 122107 Da PI: 5.9418

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10024764m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	180	2.9e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++ ++rwl++ ei++iL n++k++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+een++fq Ciclev10024764m 20 IEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQ 113 5679**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rr+yw+Leeel++ivlvhy+evk Ciclev10024764m 114 RRSYWMLEEELSHIVLVHYREVK 136 ******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	83.036	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.7E-78	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.0E-49	21	134	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.4E-4	509	597	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	7.28E-17	510	596	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.0E-4	510	595	IPR002909	IPT domain
SuperFamily	SSF48403	4.2E-16	697	806	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.49E-12	701	804	No hit	No description
Gene3D	G3DSA:1.25.40.20	8.9E-16	703	808	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.99	712	806	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.0E-6	717	807	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.351	745	777	IPR002110	Ankyrin repeat
SMART	SM00248	0.024	745	774	IPR002110	Ankyrin repeat
SMART	SM00248	610	784	813	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.46E-7	915	970	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	17	919	941	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.067	921	940	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.089	921	949	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0092	942	964	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.963	943	967	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-4	947	964	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence Send to blast
MADSRRFALG NQLDIEQILI EAQHRWLRPA EICEILRNYT KFRIAPESPH TPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEENE NFQRRSYWML 120 EEELSHIVLV HYREVKGNRT NFNRAKVAEG ATPYSQENEE TIPNSEVEGS QSSGFHPNSY 180 QMPSQTADTS LNSAQASEYE DAESVYNNQA SSRFHSFRDL QQPVVEKIDA GLADPYYPSS 240 LTNNYQGKFS VVPGADFISP AQTDKSRNSN DTGLTYEPRK NLDFPSWEDV LQNCSQGVGS 300 QPEALGDIPN QGYDILGEPF TNSFGERKEF GSHLQTRGEW QTSRNDSSHL SNWPMDQKVY 360 LDSAHDLTSQ SCEQGAAHDG LLDSLRPPHA HPNMENDVHE QLPNAEHGHL LKSDPESSLT 420 IDGKSFYSSA IKQHLIDGST EGLKKLDSFN RWMSKELGDV KESNMQSSSG AYWETVESEN 480 GVDDSGVSPQ ARLDTYMMSP SLSQDQLYSI IDFSPNWAYV GSEVKVLITG RFLMSQQEAE 540 NCKWSCMFGE IEVPAEIVAG GVLRCHTSSQ KVGRVPFYVT CSNRLSCSEV REFEYRASHI 600 PDVDVADNCG DITSENLRMQ FGKLLCLTSV STPNYDPSNL SDISQLNSKI SSLLKDENDD 660 WDLMLKLTAE EKFSSEEVKE KLVQKLLKEK LQVWLVQKAA EGGKGPCVLD HCGQGVLHFA 720 AALGYDWALE PTTVAGVNIN FRDVNGWTAL HWAAYCGRER TVASLIALGA APGALSDPTP 780 KYPSGRTPAD LASSIGHKGI AGYLAESDLS SALSAISLNK KDGDVAEVTG ATAVQTVPQR 840 CPTPVSDGDL PYGLSMKDSL AAVRNATQAA ARIHQVFRVQ SFQKKQLKEY GNDTFGISDE 900 RALSLVAVKT QKPGHHDEPV HAAATRIQNK FRSWKGRKDF LIIRQQIIKI QAYVRGHQVR 960 KNYKKIIWSV GIMEKIILRW RRRGSGLRGF KSETLTASSS MVATSAKEDD YDFLKEGRKQ 1020 KEERLQKALA RVKSMVQYPE ARDQYRRLLN VVNEIQETKA MALSNAEETA DFDDDLVDIE 1080 ALLDDTLMPN AS*

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence Send to blast

MADSRRFALG NQLDIEQILI EAQHRWLRPA EICEILRNYT KFRIAPESPH TPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEENE NFQRRSYWML  120
EEELSHIVLV HYREVKGNRT NFNRAKVAEG ATPYSQENEE TIPNSEVEGS QSSGFHPNSY  180
QMPSQTADTS LNSAQASEYE DAESVYNNQA SSRFHSFRDL QQPVVEKIDA GLADPYYPSS  240
LTNNYQGKFS VVPGADFISP AQTDKSRNSN DTGLTYEPRK NLDFPSWEDV LQNCSQGVGS  300
QPEALGDIPN QGYDILGEPF TNSFGERKEF GSHLQTRGEW QTSRNDSSHL SNWPMDQKVY  360
LDSAHDLTSQ SCEQGAAHDG LLDSLRPPHA HPNMENDVHE QLPNAEHGHL LKSDPESSLT  420
IDGKSFYSSA IKQHLIDGST EGLKKLDSFN RWMSKELGDV KESNMQSSSG AYWETVESEN  480
GVDDSGVSPQ ARLDTYMMSP SLSQDQLYSI IDFSPNWAYV GSEVKVLITG RFLMSQQEAE  540
NCKWSCMFGE IEVPAEIVAG GVLRCHTSSQ KVGRVPFYVT CSNRLSCSEV REFEYRASHI  600
PDVDVADNCG DITSENLRMQ FGKLLCLTSV STPNYDPSNL SDISQLNSKI SSLLKDENDD  660
WDLMLKLTAE EKFSSEEVKE KLVQKLLKEK LQVWLVQKAA EGGKGPCVLD HCGQGVLHFA  720
AALGYDWALE PTTVAGVNIN FRDVNGWTAL HWAAYCGRER TVASLIALGA APGALSDPTP  780
KYPSGRTPAD LASSIGHKGI AGYLAESDLS SALSAISLNK KDGDVAEVTG ATAVQTVPQR  840
CPTPVSDGDL PYGLSMKDSL AAVRNATQAA ARIHQVFRVQ SFQKKQLKEY GNDTFGISDE  900
RALSLVAVKT QKPGHHDEPV HAAATRIQNK FRSWKGRKDF LIIRQQIIKI QAYVRGHQVR  960
KNYKKIIWSV GIMEKIILRW RRRGSGLRGF KSETLTASSS MVATSAKEDD YDFLKEGRKQ  1020
KEERLQKALA RVKSMVQYPE ARDQYRRLLN VVNEIQETKA MALSNAEETA DFDDDLVDIE  1080
ALLDDTLMPN AS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU658749	8e-65	EU658749.1 Sorindeia madagascariensis clone Sorin8 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428204.1	0.0	calmodulin-binding transcription activator 3
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	V4UPL8	0.0	V4UPL8_9ROSI; Uncharacterized protein
STRING	XP_006428204.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8601	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Ciclev10024764m
Entrez Gene	18035748

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]