PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10025197m

Common Name

CICLE_v10025197mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 610aa MW: 67240.8 Da PI: 6.42

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10025197m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	269.3	1.3e-82	214	608	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgd.........pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 +e L+++Ae+++s++l+ aq +Larl++ ++ g+ p+qR+a +f+eAL++ l++ ++l + + ++s+ + ++++ a+k+f Ciclev10025197m 214 IEELIRAAECLDSNELQVAQMILARLNHSQNLVGSppvvvaagkPLQRAAIFFKEALSSLLLSLLNGLTRPTSHLSSSWPEIIQSVRAYKAFTA 307 679***********************9776665566666666***********************9999999999********* PP GRAS 87 vsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakf 168 +sPi+ f+h+t+ qa+le++ + +H+iDfdi+ G+Q++++++++a+++ + + slRiT+v++ + +e++ ++ +L +f Ciclev10025197m 308 ISPIPMFTHFTTTQALLESLFLDrgsgspPLIHVIDFDIGFGGQYASFMREIADKAaaarhsNYSTSLRITAVVP--DDYVTETRLVKANLVQF 399 **************98544344667899*****************9996655544588*****..45999******** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld.esvsleserdevLklvkslsPkvvvvveqe..adhnse.....sFl 254 A+el++ ++ +++ a+++e+l++++ ++ gE+laV l+ ++r l +s++ + + +++ ++++sP+vvv++++e d +s+ sF Ciclev10025197m 400 ARELRIGLHVDFVPARSFEMLSFKAVKLMDGEKLAVVLSPTVFRRLGgNSTDNAAAVAAFVADIRRISPNVVVFTDNEawGDFGSGttapfSFR 493 ********9999****************9999988877514445555899****************55344555677889 PP GRAS 255 erflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 + f+ +leyy+++f+sl+a +++ + ++++k+E +ll+++i+ +v +g++ ++ Wre ++ aG++pv+ls++a a++ll+kv++ Ciclev10025197m 494 RNFVTSLEYYTMVFESLDAAAAAMNagDWARKIETHLLRPKIMAAVEVAGRR-------VAPWREVFSGAGMRPVQLSQFADFLAECLLAKVQV 580 ***************88877777799******************98.......89***************************** PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 g++v +++++lvl+W++ +Lv++SaWr Ciclev10025197m 581 GGFHVAKRQAELVLCWHHWALVATSAWR 608 *************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.937	187	588	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-80	214	608	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MRVPLKSQQN SQSQQSPERV SSPNNNNINI INSVNVIARS IGGVSNNNNN NIHSRRPNTT 60 NNINITSPAN SGSKCYEPTS VLELRRSPSP IPEWDRDEHM LRTMDWESFI KDLGGLDDDC 120 SSDVAAPQLQ IQHLHPISTD DDSIDHQQQS DFNFNFSSNF NVPAADDVVS LSSSTTQYHN 180 NFPDHHPDAV SNNGNNMIVM NNLGGGFEFD YNYIEELIRA AECLDSNELQ VAQMILARLN 240 HSQNLVGSPP VVVAAGKPLQ RAAIFFKEAL SSLLLSLLNG LTRPTSHLSS SWPEIIQSVR 300 AYKAFTAISP IPMFTHFTTT QALLESLFLD RGSGSPPLIH VIDFDIGFGG QYASFMREIA 360 DKAAAARHSN YSTSLRITAV VPDDYVTETR LVKANLVQFA RELRIGLHVD FVPARSFEML 420 SFKAVKLMDG EKLAVVLSPT VFRRLGGNST DNAAAVAAFV ADIRRISPNV VVFTDNEAWG 480 DFGSGTTAPF SFRRNFVTSL EYYTMVFESL DAAAAAMNAG DWARKIETHL LRPKIMAAVE 540 VAGRRVAPWR EVFSGAGMRP VQLSQFADFL AECLLAKVQV GGFHVAKRQA ELVLCWHHWA 600 LVATSAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MRVPLKSQQN SQSQQSPERV SSPNNNNINI INSVNVIARS IGGVSNNNNN NIHSRRPNTT  60
NNINITSPAN SGSKCYEPTS VLELRRSPSP IPEWDRDEHM LRTMDWESFI KDLGGLDDDC  120
SSDVAAPQLQ IQHLHPISTD DDSIDHQQQS DFNFNFSSNF NVPAADDVVS LSSSTTQYHN  180
NFPDHHPDAV SNNGNNMIVM NNLGGGFEFD YNYIEELIRA AECLDSNELQ VAQMILARLN  240
HSQNLVGSPP VVVAAGKPLQ RAAIFFKEAL SSLLLSLLNG LTRPTSHLSS SWPEIIQSVR  300
AYKAFTAISP IPMFTHFTTT QALLESLFLD RGSGSPPLIH VIDFDIGFGG QYASFMREIA  360
DKAAAARHSN YSTSLRITAV VPDDYVTETR LVKANLVQFA RELRIGLHVD FVPARSFEML  420
SFKAVKLMDG EKLAVVLSPT VFRRLGGNST DNAAAVAAFV ADIRRISPNV VVFTDNEAWG  480
DFGSGTTAPF SFRRNFVTSL EYYTMVFESL DAAAAAMNAG DWARKIETHL LRPKIMAAVE  540
VAGRRVAPWR EVFSGAGMRP VQLSQFADFL AECLLAKVQV GGFHVAKRQA ELVLCWHHWA  600
LVATSAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-17	219	607	25	378	Protein SCARECROW
5b3h_A	2e-17	219	607	24	377	Protein SCARECROW
5b3h_D	2e-17	219	607	24	377	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.11587	0.0	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428037.1	0.0	scarecrow-like protein 15
Refseq	XP_006493843.1	0.0	scarecrow-like protein 15
TrEMBL	V4SKV1	0.0	V4SKV1_9ROSI; Uncharacterized protein
STRING	XP_006493843.1	0.0	(Citrus sinensis)
STRING	XP_006428037.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4291	28	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	1e-124	GRAS family protein

Link Out ? help Back to Top
Phytozome	Ciclev10025197m
Entrez Gene	18037581