PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025246m
Common NameCICLE_v10025246mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 579aa    MW: 64608.5 Da    PI: 6.9434
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025246mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.11.2e-882085772374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      ++ Ll++A++++s++l+laq +Larl+++ +sp+g+p++R+a++f+eAL++ l++ +  ++       + + + ++++ a+k+fs +sPi+ f+
  Ciclev10025246m 208 IQELLRAADCFDSNELRLAQIILARLNQRlRSPAGKPLERAAFFFKEALNSLLNGLTRPTC------LSLWPEIIQSVRAYKAFSGMSPIPMFT 295
                      689*************************99*************************333333......3333348999***************** PP

             GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg.........ppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                      h+t+ qa+le++eg+    +HiiDfdi+ G Q++++++++a+++++           slRiT+++s  +g  +e++ ++++L +fA+el+++f+
  Ciclev10025246m 296 HFTTTQALLESLEGSpvPLIHIIDFDIGFGSQYASFMREIAEKAHQyhsgsklmnLTSLRITAIVS--EGYVNETRLIKDNLVHFAQELRIRFH 387
                      ***************9999************************94444456666588*********..669999******************** PP

             GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalf 268
                       ++l+ +++e+l++++ ++  gE++ V l+  ++r l++s++ +    ++++ ++++sP+vvv++++e  a++ + + F + f+++leyy+++f
  Ciclev10025246m 388 VDFLLLRTFEMLSFKAVKFMDGEKTSVVLSPTIFRRLANSTNNAV---AFVNDLRRISPTVVVFTDNEawAECgSVPLFRRNFVNSLEYYTMVF 478
                      *************************************77776666...9*******************77788444568888************ PP

             GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                      +sl+a + ++ ++++k+E  ll+++i+ +v  +ga+       ++ Wre ++ aG++pv+ls++a   a++ll+kv++ g++v +++++lvl+W
  Ciclev10025246m 479 ESLDAAAMNARDWARKIETYLLRPKITAAVEVAGAR-------VAPWREVFSGAGMRPVQLSQFADFLAECLLAKVQVGGFHVAKRQAELVLCW 565
                      *****999999************************8.......89************************************************* PP

             GRAS 363 kdrpLvsvSaWr 374
                      ++ +Lv++SaWr
  Ciclev10025246m 566 HQWALVATSAWR 577
                      ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.495181557IPR005202Transcription factor GRAS
PfamPF035144.0E-86208577IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MRVPVKSPQN SQSQSPKRVS SNNNINSVNV IARNIGIRSR PNSSNKCYEP TSVLELRRSP  60
SPVAENEKPA TVASACATEI SANISSDPSI EWEEHVLRTM DWESAMKDLG LDDYYSSVPS  120
NPTTSDPDPH LQIRQNLTLT DSVHLLDQSY FNFNIPDICP SSSQHDQGFI VGNNFSAVDV  180
SSNSLVINAS SSATGTNIVN VGFEFDFIQE LLRAADCFDS NELRLAQIIL ARLNQRLRSP  240
AGKPLERAAF FFKEALNSLL NGLTRPTCLS LWPEIIQSVR AYKAFSGMSP IPMFTHFTTT  300
QALLESLEGS PVPLIHIIDF DIGFGSQYAS FMREIAEKAH QYHSGSKLMN LTSLRITAIV  360
SEGYVNETRL IKDNLVHFAQ ELRIRFHVDF LLLRTFEMLS FKAVKFMDGE KTSVVLSPTI  420
FRRLANSTNN AVAFVNDLRR ISPTVVVFTD NEAWAECGSV PLFRRNFVNS LEYYTMVFES  480
LDAAAMNARD WARKIETYLL RPKITAAVEV AGARVAPWRE VFSGAGMRPV QLSQFADFLA  540
ECLLAKVQVG GFHVAKRQAE LVLCWHQWAL VATSAWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-2121357624377Protein SCARECROW
5b3h_D7e-2121357624377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425721.10.0scarecrow-like protein 15
RefseqXP_006466756.10.0scarecrow-like protein 15
SwissprotO232101e-159SCL15_ARATH; Scarecrow-like protein 15
TrEMBLV4SPC80.0V4SPC8_9ROSI; Uncharacterized protein
STRINGXP_006466756.10.0(Citrus sinensis)
STRINGXP_006425721.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-160GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]