PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025844m
Common NameCICLE_v10025844mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 382aa    MW: 41862.2 Da    PI: 7.5218
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025844mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18298331134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +
  Ciclev10025844m 298 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGR 331
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.8E-15292346IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-14294356No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14296329IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.569296328IPR000679Zinc finger, GATA-type
CDDcd002026.34E-14297345No hitNo description
PROSITE patternPS003440298323IPR000679Zinc finger, GATA-type
PfamPF003201.9E-16298331IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPYQTHHLNF FQFHTFTPIH LSATSLLSSP PPPPPPTDFQ DMECVEAALK TSLRKEMALK  60
LSPQAVDEIC AVNLPNGVAC DDFFVDDLLD FSNDDVVAEQ QQLQEPQQEK GEEQKKHTLT  120
VCSKQDQDLD ERLNFDDLGP IPTSELAVPT DDVANLEWLS HFVEDSFAEY SSPFPAGTLP  180
VKAKENGAEP EHKPALAIHC FKTPIPAKAR SKRSRTGLRI WSLGSPSLSD SSSTSSASSS  240
SSPSSPWPVS TNPGSLASLR PAEPFIVKPP KKKLKKKSPP EGYNAGGNIS WGQFTRRCSH  300
CGVQKTPQWR TGPLGAKTLC NACGVRYKSG RLFPEYRPAC SPTFSSELHS NHHRKVMEMR  360
RKKEGLGRTE PGLAPAVVSS F*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425558.10.0GATA transcription factor 5
RefseqXP_006466892.10.0GATA transcription factor 5-like
SwissprotQ9FH573e-84GATA5_ARATH; GATA transcription factor 5
TrEMBLV4RVJ40.0V4RVJ4_9ROSI; GATA transcription factor
STRINGXP_006466892.10.0(Citrus sinensis)
STRINGXP_006425558.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-75GATA transcription factor 5