PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025883m
Common NameCICLE_v10025376mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 374aa    MW: 41690.5 Da    PI: 9.0523
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025883mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-17144234199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f k +++s+v +  ++ lp  f+++h  +  +++ ++ledesg +++ k+  +k++    l++GW++F  a++L egD++vF+l+     +l+v
  Ciclev10025883m 144 FAKSMVRSHVASCFWMGLPGYFCKSHLPD--KDTSVVLEDESGIQYTAKYFAEKTG----LSAGWRQFSTAHNLVEGDVLVFQLIA--PLKLKV 229
                      889***********************544..4567***************555555....***********************997..777899 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       ++r+
  Ciclev10025883m 230 YIIRA 234
                      99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-20136235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22137235IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-25142233No hitNo description
SMARTSM010195.3E-18144235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.576144235IPR003340B3 DNA binding domain
PfamPF023622.9E-15144234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDLELEVKKE VVDEHVNTTS HRSEAARPTD DEEATIAQLS LLPASSKPKR KRKPKTIFSA  60
DEPMKPSKKK GKIILKLKKS PPDTSVTSVP GTVEPDSRGG GKTKSSKKNK DVVDGKCSPV  120
EPKSPAMIRA EEVQSNLEPQ FPSFAKSMVR SHVASCFWMG LPGYFCKSHL PDKDTSVVLE  180
DESGIQYTAK YFAEKTGLSA GWRQFSTAHN LVEGDVLVFQ LIAPLKLKVY IIRANDFTEV  240
DGALGLLNLD APSKQNDTDA LRACKFTTSR DEFAMWDKTL KAFELLGMSV GFLRARLRRL  300
QRLAFESEGA EDTRRYIEAK AQQSQTQDEI RNIEARLVEL KGAWQRFDAE ISSLKSSAES  360
YELKFREVAN APW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753PKRKRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.89450.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425870.11e-168B3 domain-containing protein Os01g0234100
RefseqXP_006466621.11e-168B3 domain-containing protein Os01g0234100-like
TrEMBLV4SPQ60.0V4SPQ6_9ROSI; Uncharacterized protein
STRINGXP_006466621.11e-167(Citrus sinensis)
STRINGXP_006425870.11e-167(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-36B3 family protein