PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025961m
Common NameCICLE_v10025961mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 355aa    MW: 39303.8 Da    PI: 6.6048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025961mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.7e-21159209256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Ciclev10025961m 159 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDQAAYKLRGE 209
                      59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.77E-34158218No hitNo description
SuperFamilySSF541711.44E-23159217IPR016177DNA-binding domain
SMARTSM003801.2E-38159222IPR001471AP2/ERF domain
PROSITE profilePS5103223.182159216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-32159217IPR001471AP2/ERF domain
PRINTSPR003673.4E-11160171IPR001471AP2/ERF domain
PfamPF008475.6E-15160209IPR001471AP2/ERF domain
PRINTSPR003673.4E-11182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAAAIDMYNS SRSISDPFRE ELMKALEPFM NIASSNCSSS SGFSSSSYSS YSPTTSSEAN  60
FFYPDGYNLC SPSYDTPMFS QGLMSFEQQP ISSLGLNHLT PSQILQIQAQ INFQQQQQQQ  120
VASLASRASI SSPKSNLLSP KAVPMKHVSN AQVAKPTKLY RGVRQRHWGK WVAEIRLPKN  180
RTRLWLGTFD TAEEAALAYD QAAYKLRGEF ARLNFPHLKH HGAHVTGEFG DYKPLHASVD  240
AKLQAICQNL ALNNNVQKQT SKQQQQQQQE AETKPVLLPA TAANIKVENT SATSLSSPTP  300
DHSLSDAGSS SPESDISFLD FNDTKWETEM DAFGLEKYPS VEIDWEAIRK LSEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21158216160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428165.10.0ethylene-responsive transcription factor RAP2-4
RefseqXP_006464216.10.0ethylene-responsive transcription factor RAP2-4-like
TrEMBLV4SR480.0V4SR48_9ROSI; Uncharacterized protein
STRINGXP_006464216.10.0(Citrus sinensis)
STRINGXP_006428165.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.18e-68ERF family protein