PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026005m
Common NameCICLE_v10026005mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 342aa    MW: 37749.3 Da    PI: 9.2594
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026005mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.61.8e-1463150186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ +++   + +qCk++++ ++k+yk +k+   ++  + ss++++f++l+
  Ciclev10026005m  63 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYTKapkTDIQCKNRIDTVKKKYKLEKTKIMSG--GGSSKWVFFEKLD 150
                      7*************************************855556551116679****************999997..78889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-2561152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDEEDEILSP PPASPTGSPS NGRISVTVAA APPVQIPPQQ QQQNVALALP SQRNGGGGGR  60
EDCWSEGATG VLIDAWGERY LELSRGNLKQ KHWKEVADIV SSREDYTKAP KTDIQCKNRI  120
DTVKKKYKLE KTKIMSGGGS SKWVFFEKLD QLIGPTAKIP VSAAATASAV RVPVGIPVGV  180
RNPGKNQQER NVFVGGQRSS RMELRKRAAV ETEEEEESEE ESRDSIDSFP PAKRKRVEGE  240
SGKGKEKGGW GDSVKLLTQA ILKFGEAYEQ AESAKLQQVV EMEKQRMKFA KEMELQRMQF  300
FMKTQLEISQ LKHGRRTGNA GNHHRSNDNG NNNNISDYSN E*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426754.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG81e-106ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A067DRV50.0A0A067DRV5_CITSI; Uncharacterized protein
TrEMBLV4UKU30.0V4UKU3_9ROSI; Uncharacterized protein
STRINGXP_006426754.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.15e-526B-interacting protein 1-like 1