PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026006m
Common NameCICLE_v10025844mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 341aa    MW: 37190 Da    PI: 7.9163
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026006mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18257290134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +
  Ciclev10026006m 257 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGR 290
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.1E-895331IPR016679Transcription factor, GATA, plant
SMARTSM004016.8E-15251305IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-14253315No hitNo description
PROSITE profilePS5011411.569255287IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14255288IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.06E-13256304No hitNo description
PfamPF003201.6E-16257290IPR000679Zinc finger, GATA-type
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MECVEAALKT SLRKEMALKL SPQAVDEICA VNLPNGVACD DFFVDDLLDF SNDDVVAEQQ  60
QLQEPQQEKG EEQKKHTLTV CSKQDQDLDE RLNFDDLGPI PTSELAVPTD DVANLEWLSH  120
FVEDSFAEYS SPFPAGTLPV KAKENGAEPE HKPALAIHCF KTPIPAKARS KRSRTGLRIW  180
SLGSPSLSDS SSTSSASSSS SPSSPWPVST NPGSLASLRP AEPFIVKPPK KKLKKKSPPE  240
GYNAGGNISW GQFTRRCSHC GVQKTPQWRT GPLGAKTLCN ACGVRYKSGR LFPEYRPACS  300
PTFSSELHSN HHRKVMEMRR KKEGLGRTEP GLAPAVVSSF *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425558.10.0GATA transcription factor 5
RefseqXP_006466892.10.0GATA transcription factor 5-like
SwissprotQ9FH574e-85GATA5_ARATH; GATA transcription factor 5
TrEMBLV4UHI10.0V4UHI1_9ROSI; GATA transcription factor
STRINGXP_006466892.10.0(Citrus sinensis)
STRINGXP_006425558.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-76GATA transcription factor 5