PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026020m
Common NameCICLE_v10026020mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 337aa    MW: 36558.9 Da    PI: 8.3723
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026020mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-32188244158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      dep+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R+RgsgGrF
  Ciclev10026020m 188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-VKGRKPYLHESRHAHAMNRARGSGGRF 244
                      79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-36186247IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.927187247IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-27189244IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-23190212IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860192212IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-23221244IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPNLFSKDSG ISSACSASMI GVSGPLWGSS SESVVQQSSM SGCLSLKMAV PRLQFANTKQ  60
LSFQFQDQES SSTQSTGQSC SKEACVKDDN PSGQSVVSAP PGFNGIHVKP VGGHSKLASS  120
MGPHDFVFTP PHVDYNQSVA PFQLHYAEPY FSGLLSPFLP PQAMQIHHPQ MMGMAPARVP  180
LPLELAEDEP IYVNAKQYRA ILRRRQYRAK LEAQNKLVKG RKPYLHESRH AHAMNRARGS  240
GGRFLNTKKV PESKRNLTNN ELDMSESEAH RENYKDGGST TSCSDITSAS NSEDIFQQPE  300
FGFSGYSSIG SRSMQGCSAT MNGDGNIHRF LSSVDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20188248262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426613.10.0nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLV4RXZ90.0V4RXZ9_9ROSI; Uncharacterized protein
STRINGXP_006426613.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-66nuclear factor Y, subunit A3