PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026052m
Common NameCICLE_v10026052mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 332aa    MW: 36601.6 Da    PI: 7.1463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026052mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20145194255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr ++ +g+W+AeIrd +     + +r++lg+f+tae+Aa+a+++a+++++g
  Ciclev10026052m 145 RYRGVRHRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALRFRG 194
                      7*****888.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.396145202IPR001471AP2/ERF domain
CDDcd000185.21E-33145204No hitNo description
SuperFamilySSF541718.5E-23145203IPR016177DNA-binding domain
SMARTSM003803.9E-36145208IPR001471AP2/ERF domain
PfamPF008472.4E-13145194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-32145203IPR001471AP2/ERF domain
PRINTSPR003671.3E-11146157IPR001471AP2/ERF domain
PRINTSPR003671.3E-11168184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MQYSGDDQRR MRWKEWEMSA MVSALKHVVA GDTDVVVSQA QQMQQNDYNM KVTAVTSSVG  60
NSSSSSSWAG SGQKRAREME GGDNFSSRPE REVDELSHVT AGSVFVVTAG TERLSISAST  120
RMQGEAIYEY NSNKKSVRVQ EPGRRYRGVR HRPWGKWAAE IRDPFKAARV WLGTFDTAED  180
AARAYDEAAL RFRGNKAKLN FPENVKLAKS SPNANSVAAQ LTISDSTTTL LPISTPSEPI  240
VHCQALDHYV PNTEVSSDFR DYSFLVSDFA EFQRQPMSSC LSSASSPLRL TSSHPFPGQP  300
PVQFMPAKTE SDSAEFSIPP WNASSYYPPS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-24143205366ATERF1
3gcc_A8e-24143205366ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous with lower levels in seeds and siliques. {ECO:0000269|PubMed:16227468}.
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427893.20.0ethylene-responsive transcription factor ABR1 isoform X1
RefseqXP_015382946.10.0ethylene-responsive transcription factor ABR1-like isoform X1
SwissprotQ9FGF83e-38ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLV4S1F10.0V4S1F1_9ROSI; Uncharacterized protein
STRINGXP_006427893.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91182137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-27ethylene response factor 110
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]