PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026102m
Common NameCICLE_v10026102mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family BES1
Protein Properties Length: 320aa    MW: 34626.8 Da    PI: 9.9574
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026102mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822219.95.7e-6851501148
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 
                      g+sgr ptwkErEnnkrRERrRRaiaaki++GLRa+Gn+klpk++DnneVlkALc+eAGw+ve+DGttyrkgs+p+ + +e++g sa++s++ss
  Ciclev10026102m   5 GSSGRLPTWKERENNKRRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGSRPPrTPSEITGGSANISTCSS 98 
                      689*************************************************************************999*************** PP

           DUF822  94 lqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148
                      +q s++ssa++spv+sy+asp+sssfpsp++++ +++   + +lp+l++ ++v+ 
  Ciclev10026102m  99 VQPSPQSSAFPSPVPSYQASPTSSSFPSPTRFEGNPS---NYILPFLQNIASVPT 150
                      *********************************9988...599999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.6E-636131IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTAGGSSGRL PTWKERENNK RRERRRRAIA AKIFSGLRAE GNFKLPKHCD NNEVLKALCA  60
EAGWIVEEDG TTYRKGSRPP RTPSEITGGS ANISTCSSVQ PSPQSSAFPS PVPSYQASPT  120
SSSFPSPTRF EGNPSNYILP FLQNIASVPT NLPRLRISNS APVTPPLSSP TSRGPKRKTD  180
WESISNGTLS SFRHPLFAVS APSSPTRRQH FTPATIPECD ESDASTVDSG RWVSFQTVAT  240
LAAPPSPTFN LVKPVVQKNC IQKAVDGHKG LAWGMAAERG QVSEFEFESE RVKPWEGERI  300
HEVGVDDLEL TLGSGKARG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-25991372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-25991372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-25991372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-25991372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425734.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A431e-113BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLV4UI010.0V4UI01_9ROSI; Uncharacterized protein
STRINGXP_006425734.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.21e-93BES1 family protein