PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026199m
Common NameCICLE_v10026199mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WOX
Protein Properties Length: 294aa    MW: 32434.7 Da    PI: 5.875
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026199mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.2e-21105165257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+t+t+ ql++Le+ F + + +ps+++++e++ +l    +++e++V++WFqNrRa+ k+
  Ciclev10026199m 105 RQRWTPTPVQLQILESIFDQgTGTPSKQKIKEITVELsqhgQISETNVYNWFQNRRARSKR 165
                      89*****************99**************************************97 PP
2Wus_type_Homeobox103.81.1e-33104167265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G+ tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq
    Ciclev10026199m 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-1799168IPR009057Homeodomain-like
PROSITE profilePS5007114.479101166IPR001356Homeobox domain
SuperFamilySSF466894.71E-18103167IPR009057Homeodomain-like
SMARTSM003891.3E-14103170IPR001356Homeobox domain
PfamPF000461.1E-18105165IPR001356Homeobox domain
CDDcd000864.32E-14105167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEWDNIREAA QQETQTQNQN QNQRGGENDN NNVVNGVMYV KVMTDEQLET LRKQIAVYAT  60
ICEQLVEMHK SLSAHQDLAA AGGRLGNIYC DPLMTSGGGH KISARQRWTP TPVQLQILES  120
IFDQGTGTPS KQKIKEITVE LSQHGQISET NVYNWFQNRR ARSKRKQLVS SSANTLHNGG  180
GAGAGGADSE VETEVDSLLL HDEHKTTKPE NLSSAHSTSQ PQHLRNLPPT PRPRDDDDDP  240
MCFHTPADIS SSQLHFLGVF SNNPRDDHLT GKMGGMPGSY NLYDHAEDYS MAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.56940.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425279.10.0WUSCHEL-related homeobox 13 isoform X1
SwissprotO817885e-94WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLV4UGQ40.0V4UGQ4_9ROSI; Uncharacterized protein
STRINGXP_006425279.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-88WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]