PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026273m
Common NameCICLE_v10026058mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 271aa    MW: 30114.7 Da    PI: 7.8549
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026273mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.2e-36101022103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++++isw+e+g +f+v+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g++e l+
  Ciclev10026273m  10 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK---------WEFANENFRRGHREFLT 94 
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  Ciclev10026273m  95 EIRRRKTA 102
                      *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-37393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.6E-57699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.72E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAQRSVPAPF LMKTYQLVDD PSTDDVISWN ESGATFIVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVADKWEF ANENFRRGHR EFLTEIRRRK TATGQSAQTA GKTKATSPSN  120
SGEDMGSTST SSPESKNQGS VETAKFADLS DENAKLRRDN ETLSSELAQA KKQCDELITF  180
LTEYVKVGPD QINRIMGQGS CGSILDGLVG DTDDDEKKES SGGDLKLFGV WLKGERKKRA  240
REETVVCGGS HEMKKVEFCA PYIKSSKVCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-25510316124Heat shock factor protein 1
5d5u_B1e-25510125131Heat shock factor protein 1
5d5v_B1e-25510125131Heat shock factor protein 1
5d5v_D1e-25510125131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.32770.0fruit
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425894.10.0heat shock factor protein HSF24 isoform X2
SwissprotP223351e-112HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLV4UIJ90.0V4UIJ9_9ROSI; Uncharacterized protein
STRINGXP_006466606.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-99heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]