PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10026374m

Common Name

CICLE_v10026374mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 240aa MW: 26244.8 Da PI: 8.3604

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10026374m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	103.4	2e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q Ciclev10026374m 2 SCNGCRVLRKGCSESCILRPCLqwiesPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQ 95 6******************************************************************************************* PP DUF260 90 lkaelall 97 +++e++l+ Ciclev10026374m 96 AAVETVLR 103 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.062	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE SQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPV PELLNSCGGS 120 PTPTSDDVSE AEVTCTDMSR LQDRSFPSSH CRFSSSRSKV SPAKRKRVEE SAMKLQQSDL 180 DLRLTPRFTG KVPPEVRRRP GTPSMNSEES GTTTCFESGL TDHRYLNGAE ERKLLNLFV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.300	0.0	vegetative tissue

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM596716	0.0	HM596716.1 Citrus trifoliata clone Y2-H15 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426065.1	1e-176	LOB domain-containing protein 38
Swissprot	Q9SN23	3e-96	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2H5PCU3	1e-175	A0A2H5PCU3_CITUN; Uncharacterized protein
TrEMBL	V4SKD9	1e-175	V4SKD9_9ROSI; Uncharacterized protein
STRING	XP_006426065.1	1e-176	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-90	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Ciclev10026374m
Entrez Gene	18037011