PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026414m
Common NameCICLE_v10026414mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26374 Da    PI: 7.0964
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026414mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-1968120456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++++t+eq e Le +F +++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Ciclev10026414m  68 KRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120
                      5689***********************************************99 PP
2HD-ZIP_I/II114.46.7e-3767157292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      kkr+l++eq++lLE++F +e+kLe++rK +la eLgl+prqvavWFqnrRAR ktk++E+ y++Lk+a+++++ e++rLe+ev++L+e+l+
  Ciclev10026414m  67 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLS 157
                      9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.09962122IPR001356Homeobox domain
SMARTSM003893.4E-1865126IPR001356Homeobox domain
SuperFamilySSF466891.37E-1666129IPR009057Homeodomain-like
CDDcd000864.46E-1567123No hitNo description
PfamPF000461.1E-1668120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-1969128IPR009057Homeodomain-like
PRINTSPR000316.5E-693102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000316.5E-6102118IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MIREMIVTNT NHQVEDNKSN MVLLSQFYPS DVLTPTGIVP QQGEPSKPKR RQRKRNTNGN  60
GGFRALKKRK LTAEQAELLE MHFGNEHKLE SDRKDKLAAE LGLDPRQVAV WFQNRRARDK  120
TKKIEETYAT LKTAHENVVV EKTRLESEVA TLKEKLSVAE KEIKKMSELI EGISLNNPSA  180
TIPTDMDTVD SPFTLDPFAG NLGWFDYEDL LYLLQQNYIS AAEWLLLHTY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15269RKRNTNGNGGFRALKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.71290.0abscission zone| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425728.11e-171homeobox-leucine zipper protein ATHB-40
RefseqXP_006466750.11e-171homeobox-leucine zipper protein ATHB-40
SwissprotO232082e-60ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLV4RVY71e-170V4RVY7_9ROSI; Uncharacterized protein
STRINGXP_006466750.11e-171(Citrus sinensis)
STRINGXP_006425728.11e-171(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.18e-63homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]