PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10026458m

Common Name

CICLE_v10026374mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 218aa MW: 23940.2 Da PI: 8.4283

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10026458m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.5	5.9e-16	2	62	1	56
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ Ciclev10026458m 2 SCNGCRVLRKGCSESCILRPCLqwiesPESQGHATVFVAKFFGRAGLMSFISAVPESQRPG 62 6*********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.401	1	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-12	2	62	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE SQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PGLLWTGNWH VCQAAVETVL RGGTLRPVPE LLNSCGGSPT PTSDDVSEAE VTCTDMSRLQ 120 DRSFPSSHCR FSSSRSKVSP AKRKRVEESA MKLQQSDLDL RLTPRFTGKV PPEVRRRPGT 180 PSMNSEESGT TTCFESGLTD HRYLNGAEER KLLNLFV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.300	0.0	vegetative tissue

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM596716	0.0	HM596716.1 Citrus trifoliata clone Y2-H15 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426065.1	1e-154	LOB domain-containing protein 38
Swissprot	Q9SN23	2e-74	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	V4UIY6	1e-158	V4UIY6_9ROSI; Uncharacterized protein
STRING	XP_006426065.1	1e-153	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-68	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Ciclev10026458m
Entrez Gene	18037011