PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10026520m

Common Name

CICLE_v10026472mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

DBB

Protein Properties

Length: 203aa MW: 22646.3 Da PI: 8.1722

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10026520m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.1	1.7e-08	4	42	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +e ++lfC ++ lC++C l+eH + H Ciclev10026520m 4 LCDVCEATAATLFCPADEAALCASCDLKEHMNnklassH 42 7****99*******************664666663 PP
2	zf-B_box	24.5	5.8e-08	54	87	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkgHt 38 kC++++++++ lfCe+ ++++C +C + H gH Ciclev10026520m 54 KCDLCDREKAFLFCEKGGMCICLTCDMVFHIGHP 87 8*****************************8896 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.552	1	50	IPR000315	B-box-type zinc finger
CDD	cd00021	5.87E-6	3	33	No hit	No description
Pfam	PF00643	1.0E-5	3	34	IPR000315	B-box-type zinc finger
SMART	SM00336	7.6E-7	4	47	IPR000315	B-box-type zinc finger
Gene3D	G3DSA:4.10.45.10	4.8E-4	14	35	IPR000315	B-box-type zinc finger
SuperFamily	SSF57845	1.56E-5	48	90	No hit	No description
PROSITE profile	PS50119	8.887	50	91	IPR000315	B-box-type zinc finger
SMART	SM00336	1.8E-6	50	91	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.7E-7	53	87	IPR000315	B-box-type zinc finger
CDD	cd00021	9.65E-7	54	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MQILCDVCEA TAATLFCPAD EAALCASCDL KEHMNNKLAS SHVRHDLPPS SFGKCDLCDR 60 EKAFLFCEKG GMCICLTCDM VFHIGHPRFL VMSQKIQFPV EDPIWGKPIS RPLNQAEIKK 120 EQNDPLEMTI GEDQQNHKVF PTAVADVRAT SKAKRGNKMI DLNRKPRNPK AAAPKYKKKQ 180 TIDLKALLAL ECQTSNHHLQ FP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.20996	0.0	flower

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006425536.1	1e-150	B-box zinc finger protein 18 isoform X1
Refseq	XP_006466912.1	1e-150	B-box zinc finger protein 18-like isoform X5
TrEMBL	V4SNY0	1e-148	V4SNY0_9ROSI; Uncharacterized protein
STRING	XP_006466910.1	1e-136	(Citrus sinensis)
STRING	XP_006425537.1	1e-136	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	7e-34	DBB family protein

Link Out ? help Back to Top
Phytozome	Ciclev10026520m
Entrez Gene	18037582