PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026578m
Common NameCICLE_v10026578mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 185aa    MW: 21206.4 Da    PI: 10.6824
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026578mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.2e-18110157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd +l++++  +G g+W++ ar+ g++Rt+k+c++rw++yl
  Ciclev10026578m 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYL 157
                      79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.509105161IPR017930Myb domain
SMARTSM007172.0E-15109159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-21109156IPR009057Homeodomain-like
PfamPF002493.6E-16110157IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-21111184IPR009057Homeodomain-like
CDDcd001671.55E-12112157No hitNo description
Gene3DG3DSA:1.10.10.609.8E-5157184IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MYGFARFHKI FSANLLYAAS KTYPSNLETT AAANSNVGTG RLGSSICCSH GYLPNPLLEF  60
YPRRTRVTQF VHLRQPKLKK TEVKGRACRA NRNFKSSSTT ISEEDLDMRK GPWTVEEDFK  120
LINYIVTHGE GRWNRLARCA GLKRTGKSCR LRWLNYLRPD VRLGKITLEE QLLILELHSR  180
WGNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-1410718424100MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426324.21e-136transcription factor JAMYB
TrEMBLV4UJN81e-134V4UJN8_9ROSI; Uncharacterized protein
STRINGXP_006426324.11e-135(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.16e-42myb domain protein 78