PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026687m
Common NameCICLE_v10026687mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 156aa    MW: 17119.3 Da    PI: 9.7914
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026687mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-172170255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Ciclev10026687m 21 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 70
                     59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.0E-372184IPR001471AP2/ERF domain
PROSITE profilePS5103221.972178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-302179IPR001471AP2/ERF domain
PfamPF008475.0E-112270IPR001471AP2/ERF domain
CDDcd000182.77E-262280No hitNo description
PRINTSPR003672.2E-112233IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-212279IPR016177DNA-binding domain
PRINTSPR003672.2E-116080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0010941Biological Processregulation of cell death
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MQGGPAVAET TAARKRSMDR PYKGIRMRKW GKWVAEIREP NKRSRIWLGS YSTPVAAARA  60
YDTAVFYLRG PSARLNFPDL LRGEGAVGAA DMSAAFIRKK ATEVGARVDA IESALHNTPD  120
QEIPPPHNDS GFLNRVDLNK LPDPEDLDGA DWQTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-142078463ATERF1
3gcc_A3e-142078463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.12820.0leaf| vegetative tissue
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00401DAPTransfer from AT3G50260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324693e-32GU732469.1 Malus x domestica AP2 domain class transcription factor (AP2D45) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425956.11e-111ethylene-responsive transcription factor ERF011
SwissprotQ9SNE14e-57ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A2H5PD531e-109A0A2H5PD53_CITUN; Uncharacterized protein
TrEMBLV4SQ371e-109V4SQ37_9ROSI; Uncharacterized protein
STRINGXP_006425956.11e-110(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.11e-59cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]