PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10026733m

Common Name

CICLE_v10026733mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 139aa MW: 15658.3 Da PI: 9.9446

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10026733m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	43	101	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C++ gC+vkk+ver++ed ++v++tYeg+Hnhe Ciclev10026733m 43 MDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHE 101 69********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.7E-33	30	103	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-28	35	103	IPR003657	WRKY domain
PROSITE profile	PS50811	30.917	38	103	IPR003657	WRKY domain
SMART	SM00774	8.6E-34	43	102	IPR003657	WRKY domain
Pfam	PF03106	1.6E-24	44	101	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MGGSSSGATS EKNNIKSKNG IKKMKMEVGQ RFAFRTKSEL EVMDDGFKWR KYGKKSVKNS 60 PNPRNYYKCS TGGCQVKKRV ERDREDSSYV ITTYEGTHNH ESPCVVYDYY NHHQQQMPQN 120 GWTLQPNSSS SPPSSSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-25	33	103	7	77	Probable WRKY transcription factor 4
2lex_A	1e-25	33	103	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006427979.2	2e-99	probable WRKY transcription factor 50
Refseq	XP_006464492.1	2e-99	probable WRKY transcription factor 50
Swissprot	Q93WU9	9e-40	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	V4UP26	2e-98	V4UP26_9ROSI; Uncharacterized protein
STRING	XP_006464492.1	7e-99	(Citrus sinensis)
STRING	XP_006427979.1	3e-99	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-40	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Ciclev10026733m
Entrez Gene	18037074

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]