PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10026848m

Common Name

CICLE_v10026848mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 93aa MW: 10681.9 Da PI: 5.1852

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10026848m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.4e-07	15	60	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ +l+ +a + + ++ +W Ia+ +g g +++++k r+ + Ciclev10026848m 15 SWTAKKNKLFENALAIYDKDtpdRWQIIAKIVG-GTSDEEVKRRYEM 60 79*****************************.********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.319	8	62	IPR017877	Myb-like domain
SMART	SM00717	7.5E-6	12	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.54E-12	14	69	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-5	15	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.21E-6	15	62	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MEYSGQRTST ISGSSWTAKK NKLFENALAI YDKDTPDRWQ IIAKIVGGTS DEEVKRRYEM 60 LVDDIKSIES DRVPLPDYAQ NDTSNEKRRY LF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-26	12	88	7	86	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467147.1	6e-60	protein RADIALIS-like 4
Swissprot	F4JVB8	1e-27	RADL1_ARATH; Protein RADIALIS-like 1
TrEMBL	V4SP90	3e-61	V4SP90_9ROSI; Uncharacterized protein
STRING	XP_006425671.1	5e-62	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM221	28	198

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	6e-30	RAD-like 1

Link Out ? help Back to Top
Phytozome	Ciclev10026848m
Entrez Gene	18036988

Publications ? help Back to Top
Zhang M, et al. ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development. Plant Physiol., 2013. 163(2): p. 713-20 [PMID:23922269]