PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10026937m

Common Name

CICLE_v10026937mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 132aa MW: 15472.3 Da PI: 10.962

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10026937m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.2	3.3e-16	8	51	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+i + rqvt++kR++ ++KKA E+Sv C+++ +i fs+t Ciclev10026937m 8 KKIADAKARQVTYAKRKKSLIKKAREISVACGIDLVLITFSPTK 51 6799999**********************************985 PP
2	K-box	19.5	4.1e-08	92	132	45	85
K-box 45 sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +Ls ++ Le++L+++l+++ +kKnel+++ +++ +k+++ Ciclev10026937m 92 DLSSSNIILLERNLKQALQQVQNKKNELIKSPLRKYKKRNQ 132 78999999*****************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.633	1	52	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-16	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-10	2	22	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-19	3	82	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.3E-16	9	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-10	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-10	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MGKKIEIKKI ADAKARQVTY AKRKKSLIKK AREISVACGI DLVLITFSPT KRGRSTKFCS 60 MKRFKIEDLI QRYLNLSPEK KFQFYEPDPK DDLSSSNIIL LERNLKQALQ QVQNKKNELI 120 KSPLRKYKKR NQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015384427.1	1e-50	probable serine/threonine-protein kinase tsuA
Refseq	XP_024037061.1	3e-50	probable serine/threonine-protein kinase tsuA
TrEMBL	A0A2H5QC65	2e-86	A0A2H5QC65_CITUN; Uncharacterized protein
TrEMBL	V4SW31	7e-89	V4SW31_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006428136.1	1e-89	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-14	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Ciclev10026937m
Entrez Gene	18037695