PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10027033m

Common Name

CICLE_v10027033mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 162aa MW: 18535 Da PI: 6.6115

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10027033m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.6	2.4e-39	6	103	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk lrrkC+kdCvlapyfp+++p++f vhk++Gasn++k+l+++p++ re+a++s++ eA+ r++dPvyG+vg+i++lqq++ ++++el Ciclev10027033m 6 RCAACKSLRRKCPKDCVLAPYFPSTDPQRFSEVHKIYGASNISKMLQNIPQHLREMAADSMAIEAKLRVQDPVYGCVGIIHQLQQRIIEVQSEL 99 6******************************************************************************************999 PP DUF260 95 allk 98 + k Ciclev10027033m 100 LKSK 103 7765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.613	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-39	6	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MEGSSRCAAC KSLRRKCPKD CVLAPYFPST DPQRFSEVHK IYGASNISKM LQNIPQHLRE 60 MAADSMAIEA KLRVQDPVYG CVGIIHQLQQ RIIEVQSELL KSKCEIAFCN AHELQQQQQW 120 QQLQHWQQQQ PMFHAAHELS WLDSSDQQEL TSDPSFSEFG F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	4	104	9	116	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	4	104	9	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024037003.1	1e-114	LOB domain-containing protein 24
Swissprot	P59468	1e-43	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	V4S0Y5	1e-116	V4S0Y5_9ROSI; Uncharacterized protein
STRING	XP_006427748.1	1e-116	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-45	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Ciclev10027033m
Entrez Gene	18037459